PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00218.1_g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 234aa    MW: 26623.1 Da    PI: 5.3302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00218.1_g00040.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2061110255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa a+++a++k++g
  Rsa1.0_00218.1_g00040.1  61 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEEAALAYDRAALKFKG 110
                              8********.**********94....45************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-3360119IPR001471AP2/ERF domain
CDDcd000184.84E-3460120No hitNo description
SMARTSM003806.2E-3961124IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2361119IPR016177DNA-binding domain
PROSITE profilePS5103224.97461118IPR001471AP2/ERF domain
PfamPF008472.6E-1461110IPR001471AP2/ERF domain
PRINTSPR003674.6E-126273IPR001471AP2/ERF domain
PRINTSPR003674.6E-1284100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSAAENPSWN ESDVTAMISS LSRAIEYPAT DGQERSDPPV KQELDKPDQL QQDQDQPRRK  60
HYRGVRQRPW GKWAAEIRDP KKAARVWLGT FETAEEAALA YDRAALKFKG TKAKLNFPQH  120
VQAPSTTTYF ASQSGTDHSP REGSELMNSP PPPPTTMWPT NYNQDILQYA QLLTSNNDVD  180
LSYYTSSLLS PQQQPLSTPS SSFSSLTSQQ QQQQHQQGEE ESNYSYHYYN YPRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2760121163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A2e-2760123468ATERF1
2gcc_A2e-2760123468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530351e-161AK353035.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609659.11e-117PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9LYU33e-82EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLA0A0D3EFT41e-117A0A0D3EFT4_BRAOL; Uncharacterized protein
STRINGBra006195.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-51related to AP2 6l